BENG 280A: Principles of Biomedical Imaging

Bioengineering 280A: Principles of Biomedical Imaging

Fall Quarter 2004
Instructor: Thomas Liu
Center for FMRI (Bldg 822 on UCSD Map)
(858) 822-0542; ttliu@ucsd.edu
Lectures: Tuesdays and Thursdays, 8:00-9:20 AM
Sequoyah 147
Office Hours: Tuesdays and Thursdays, 9:40-10:30 AM; Center for fMRI Conference room
Teaching Assistant: Anna Jokiel, ajokiel@ucsd.edu
TA Office hours: Mondays 4 to 5 p.m. in Multimedia Lab (Rm 161) in the Bioengineering bldg.
Fridays 3 to 4 p.m. in Room 2004 of the Basic Science Building (BSB)
Text: 1) Fundamentals of Medical Imaging by Paul Suetens (on reserve at the SE library)
2) Assorted Handouts
Prerequisites: Graduate standing or consent of intructor.
Course Mirror Sites: fmriserver.ucsd.edu
 cfmri.ucsd.edu

Handouts:

Check here for class announcements.
  1. Information Sheet
  2. Syllabus (updated 10/11/04)
  3. Homework 1 (corrected 9/30/04) with MATLAB file
  4. Homework 2 (Corrected 10/13/04)
  5. Derivation of FT of comb function.
  6. Homework 3 (Corrected 10/18/04)
  7. Homework 3 (problem 3b solns)
  8. Homework 4
  9. Homework 5 (Corrected 11/09/04)
  10. Homework 6
  11. Homework 7

Lecture Slides:

  1. Course Overview (12 MB)
  2. Linear Systems Lecture 1 ( 2 slides/page ; 3 slides/page ) In-class Example
  3. Linear Systems Lecture 2 ( 2 slides/page ; 3 slides/page ) In-class Examples
  4. Linear Systems Lecture 3 ( 2 slides/page ; 3 slides/page )
  5. Linear Systems Lecture 4 ( 2 slides/page ; 3 slides/page )
  6. Linear Systems Lecture 5 ( 2 slides/page ; 3 slides/page )
  7. MRI Lecture 1 ( 2 slides/page ; 3 slides/page )
  8. MRI Lecture 2 ( 2 slides/page ; 3 slides/page )
  9. MRI Lecture 3 ( 2 slides/page ; 3 slides/page ) (Slide 28 corrected 10/27/04)
  10. MRI Lecture 4 ( 2 slides/page ; 3 slides/page )
  11. XRAY/CT Lecture 1 ( 2 slides/page ; 3 slides/page )
  12. XRAY/CT Lecture 2 ( 2 slides/page ; 3 slides/page )
  13. Noise Lecture ( 2 slides/page ; 3 slides/page )
  14. Ultrasound Lecture 1 ( 2 slides/page ; 3 slides/page )
  15. Ultrasound Lecture 2 Notes
  16. Ultrasound Lecture 3 Notes
  17. PET Lecture Notes

Related Links:

  1. Convolution Website
  2. Duke Virtual Imaging Lab
  3. On-line Medical Imaging Resources by P. Sprawls
  4. Principles of Computerized Tomographic Imaging by Kak and Slaney
  5. The Basics of NMR by Joseph Hornak (an animated on-line book).
  6. MRI Educational Links

Related Classes on the Web:

  1. BME530 Medical Imaging Systems (taught by W. Block at Univ. Wisconsin Madison)
  2. BME516 Medical Imaging Systems (taught by D. Noll at Univ. Michigan )
  3. 22.058 Principles of Medical Imaging (taught by D. Cory at MIT )
  4. EE369C Medical Image Reconstruction (taught by J. Pauly at Stanford)
  5. COGSCI 276 NeuroImaging (taught by M. Sereno at UCSD)
  6. EE591 MRI (taught by K. Nayak at USC)