BENG 280A: Principles of Biomedical Imaging: Fall 2005

Bioengineering 280A: Principles of Biomedical Imaging
Fall Quarter 2005

Instructor: Thomas Liu
Center for FMRI (Map)
(858) 822-0542; ttliu@ucsd.edu
Lectures: Tuesdays and Thursdays, 9:30-10:50 AM
Warren Lecture Hall 2208
Office Hours: Tuesdays 11 AM-12PM and Wednesdays, 11:30 AM-12:30 PM; Center for fMRI Conference room
Teaching Assistant: Eric Roller, eroller@ucsd.edu
TA Office hours: Mondays 4 to 5 p.m PFBH 326; Tuesdays 1 to 2 p.m. Center for fMRI
Texts: 1) Required text: Medical Imaging Signals and Systems by J.L. Prince and J.M. Links, Prentice-Hall 2005
2) Optional Text: Principles of MRI by D.G. Nishimura (we will custom order copies from the author)
3) Assorted Handouts
Prerequisites: Graduate standing or consent of intructor.
Course Mirror Sites: fmriserver.ucsd.edu
 cfmri.ucsd.edu

Handouts:

Check here for class announcements.
  1. Information Sheet
  2. Syllabus
  3. Homework 1 with MATLAB file
  4. Homework 2
  5. Homework 3
  6. Homework 4
  7. Homework 5
  8. Midterm
  9. Homework 6
  10. Homework 7
  11. PROJECT ( PILS paper ; Review paper )

Lecture Slides:

  1. Last year's slides
  2. Introductory Lecture ( 2 slides/page ; 3 slides/page )
  3. MRI Lecture 1 ( 2 slides/page ; 3 slides/page ) Quiz Tif File1 ; Quiz Tif File2 ;
  4. MRI Lecture 2 ( 2 slides/page ; 3 slides/page )
  5. MRI Spin Echo Slides
  6. Linear Systems Lecture 1 ( 2 slides/page ; 3 slides/page )
  7. Linear Systems Lecture 2 ( 2 slides/page ; 3 slides/page )
  8. Linear Systems Lecture 3 ( 2 slides/page ; 3 slides/page )
  9. MRI Lecture 3 ( 2 slides/page ; 3 slides/page )
  10. MRI Lecture 4 ( 2 slides/page ; 3 slides/page ) Example Problem ; Example Solution
  11. MRI Lecture 5 ( 2 slides/page ; 3 slides/page )
  12. MRI Lecture 6 ( 2 slides/page ; 3 slides/page )
  13. Noise Lecture ( 2 slides/page ; 3 slides/page )
  14. CT Lecture 1( 2 slides/page ; 3 slides/page )
  15. CT Lecture 2( 2 slides/page ; 3 slides/page )
  16. Ultrasound Lecture 1( 2 slides/page ; 3 slides/page )
  17. Ultrasound Lecture 2( 2 slides/page ; 3 slides/page )
  18. Ultrasound Lecture 3( 2 slides/page ; 3 slides/page )

Related Links:

  1. Convolution Website
  2. Duke Virtual Imaging Lab
  3. On-line Medical Imaging Resources by P. Sprawls
  4. Principles of Computerized Tomographic Imaging by Kak and Slaney
  5. The Basics of NMR by Joseph Hornak (an animated on-line book).
  6. MRI Educational Links

Related Classes on the Web:

  1. BME530 Medical Imaging Systems (taught by W. Block at Univ. Wisconsin Madison)
  2. BME516 Medical Imaging Systems (taught by D. Noll at Univ. Michigan )
  3. 22.058 Principles of Medical Imaging (taught by D. Cory at MIT )
  4. EE369C Medical Image Reconstruction (taught by J. Pauly at Stanford)
  5. COGSCI 276 NeuroImaging (taught by M. Sereno at UCSD)
  6. EE591 MRI (taught by K. Nayak at USC)