Bioengineering 280A: Principles of Biomedical Imaging
Fall Quarter 2009
Instructor: | Thomas Liu Center for FMRI (Map) (858) 822-0542; ttliu@ucsd.edu |
Lectures: | Tuesdays and Thursdays, 9:30-10:50 AM Powell-Focht Bioengineering Hall Room 161 |
Office Hours: | Tuesdays 4 pm to 5 pm in the
Center for FMRI Conference room Wednesdays 12 pm to 1 pm in the Center for FMRI Conference Room |
Teaching Assistant: | Jia (Tim) Guo, jguo@ucsd.edu |
TA Office hours: | Mondays: TBD; Wednesdays: 3:30 pm to 4:30 pm;
Center for FMRI Conference room |
Texts: | 1) Required text: Medical Imaging Signals and Systems by J.L. Prince and J.M. Links, Prentice-Hall 2005; Errata 2) Required Text: Principles of MRI by D.G. Nishimura (we will custom order copies from the author) 3) Assorted Handouts |
Prerequisites: | Graduate standing or consent of intructor. |
Course Mirror Sites: | fmriserver.ucsd.edu cfmriweb.ucsd.edu |
Handouts:
- Information Sheet
- Tentative Syllabus
- Homework 1
- Homework 2
- Supplementary Exercises
- Homework 3 with MATLAB file
- Homework 4
- Homework 5 with Supplementary Notes and Safety Video (200MB) . Video also viewable online here
- Midterm Project
- Homework 6 with MATLAB file
- Homework 7 with MATLAB file
- Final Project
Lecture Slides:
- Last year's slides
- Introductory Lecture (9/24/08)
- X-Rays/CT Lecture 1 (9/29/09 & 10/01/09)
- X-Rays/CT Lecture 2 (10/01/09 & 10/06/09)
- CT/Fourier Lecture 1 (10/06/09 & 10/08/09)
- CT/Fourier Lecture 2 (10/08/09 & 10/13/09)
- CT/Fourier Lecture 3 (10/13/09 & 10/15/09)
- CT/Fourier Lecture 4 (10/15/09 & 10/20/09)
- CT/Fourier Lecture 5 (10/20/09)
- MRI Lecture 1 (10/22/09)
- MRI Lecture 2 (10/27/09 & 10/29/09)
- MRI Lecture 2a (10/29/09)
- MRI Lecture 3 (10/29/09 & 11/03/09)
- MRI Lecture 4 (11/05/09)
- MRI Lecture 5 (11/12/09)
- MRI Lecture 6 (11/17/09)
- US Lecture 1 (11/24/09)
- US Lecture 2 (12/01/09)
Related Links:
- Convolution Website
- Duke Virtual Imaging Lab
- On-line Medical Imaging Resources by P. Sprawls
- Principles of Computerized Tomographic Imaging by Kak and Slaney
- The Basics of MRI by Joseph Hornak (an animated on-line book).
- The Basics of NMR by Joseph Hornak (an animated on-line book).
- MRI Educational Links
- MRI Tutorials and Q&A
- MRI Artifacts
- SpinBench: Graphic MR Pulse Sequence Environment for MAC OS X
- Bloch Simulator for Windows/MAC/Linux
- MRI Software Tools
Related Classes on the Web:
- Bioengineering 208 Magnetic Resonance Imaging Lab
- SOM276A-C fMRI Courses in the UCSD School of Medicine
- COGSCI 276 NeuroImaging (taught by M. Sereno at UCSD)
- BME530 Medical Imaging Systems (taught by W. Block at Univ. Wisconsin Madison)
- BME516 Medical Imaging Systems (taught by D. Noll at Univ. Michigan )
- EE369C Medical Image Reconstruction (taught by J. Pauly at Stanford)
- EE591 MRI (taught by K. Nayak at USC)
- BE248 MRI (taught by M. Tyszka at Caltech)
- HST.584J/22.561J Magnetic Resonance Analytic, Biochemical, and Imaging Techniques (MIT,Spring 2006)
- 22.56J/HST.561J Noninvasive Imaging in Biology and Medicine (MIT, Fall 2005)
- 22.058 Principles of Medical Imaging (MIT, Fall 2002)