!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> Bioengineering 280A: Principles of Biomedical Imaging - Fall Quarter 2014
Center for Functional MRI In the Department of Radiology

Bioengineering 280A: Principles of Biomedical Imaging
Fall Quarter 2014

Instructor: Thomas Liu
Center for FMRI (Map)
(858) 822-0542; ttliu@ucsd.edu

Lectures: Mondays and Wednesdays, 11:00 AM to 12:20 PM
Powell-Focht Bioengineering Hall (PFBH) Room 161
Office Hours: Mondays and Wednesdays 12:20 to 1:20 pm, PFBH 161
Teaching Assistant: Chunshu Wei chw138@eng.ucsd.edu
TA Office hours: Mondays and Wednesdays, 2 to 3 pm, San Diego Supercomputer Center (SDSC) B195E
Texts: 1) Required Text: Principles of MRI by D.G. Nishimura (available from www.lulu.com)
2) Assorted Handouts
Prerequisites: Graduate standing or consent of intructor.
Course Sites: Main Site: cfmriweb.ucsd.edu
Mirror Site: fmriserver.ucsd.edu

Handouts:

  1. Information Sheet
  2. Revised Syllabus
  3. Homework 1
  4. Example MATLAB file
  5. Homework 2
  6. Homework 3 with MATLAB file
  7. Homework 4
  8. Homework 5 with Supplementary Notes
  9. 2013 Midterm and solutions
  10. Homework 6
  11. Final Project
  12. Homework 7 with MATLAB file
  13. 2014 Midterm and solutions

Lecture Slides:

  1. Slides from 2013
  2. Introductory Lecture (10/06/14)
  3. X-Rays/CT Lecture 1 (10/08/14)
  4. X-Rays/CT Lecture 2 (10/13/14)
  5. CT/Fourier Lecture 1 (10/15/14)
  6. CT/Fourier Lecture 2 (10/20/14)
  7. CT/Fourier Lecture 3 (10/22/14)
  8. CT/Fourier Lecture 4 (10/27/14)
  9. CT/Fourier Lecture 5 (10/28/14) with Notes on Class Exercise and Backprojection movie
  10. CT/Fourier Lecture 6 (11/02/14) with Filtered Backprojection movie
  11. CT/Fourier Lecture 7 (11/05/14)
  12. MRI Lecture 1 (11/05/14)
  13. MRI Lecture 2 (11/10/14)
  14. MRI Lecture 3 (11/12/14)
  15. MRI Lecture 4 (11/17/14)
  16. MRI Lecture 5 (11/19/14)
  17. MRI Lecture 6 (11/25/14)
  18. Motion Related Contrast in MRI (12/01/14)
  19. Diffusion Tensor Imaging (12/03/14)
  20. Functional MRI (12/08/14)
  21. Future Directions (12/10/14)

Related Links:

  1. Making an X-Ray Tube
  2. Matlab Tutorial
  3. Mathworks Matlab Tutorials
  4. Convolution Website
  5. Magritek MRI Videos
  6. Duke Virtual Imaging Lab
  7. On-line Medical Imaging Resources by P. Sprawls
  8. Principles of Computerized Tomographic Imaging by Kak and Slaney
  9. The Basics of MRI by Joseph Hornak (an animated on-line book).
  10. The Basics of NMR by Joseph Hornak (an animated on-line book).
  11. MRI Educational Links
  12. MRI Tutorials and Q&A
  13. MRI Artifacts
  14. SpinBench: Graphic MR Pulse Sequence Environment for MAC OS X
  15. Bloch Simulator for Windows/MAC/Linux
  16. MRI Software Tools

Related Classes on the Web:

  1. Bioengineering 278 Magnetic Resonance Imaging Lab
  2. SOM276A-C fMRI Courses in the UCSD School of Medicine
  3. Introduction to Biomedical Imaging EdX Course
  4. Fundamentals in Biomedical Imaging EPFL Courses Videos on Youtube
  5. COGSCI 276 NeuroImaging (formely taught by M. Sereno at UCSD)
  6. BME530 Medical Imaging Systems (taught by W. Block at Univ. Wisconsin Madison)
  7. BME516 Medical Imaging Systems (taught by D. Noll at Univ. Michigan )
  8. EE369C Medical Image Reconstruction (taught by J. Pauly at Stanford)
  9. EE591 MRI (taught by K. Nayak at USC)