Bioengineering 280A: Principles of Biomedical Imaging
Fall Quarter 2015
Instructor: | Thomas Liu Center for FMRI (Map) (858) 822-0542; ttliu@ucsd.edu |
Lectures: | Mondays and Wednesdays, 11:00 AM to 12:20 PM Powell-Focht Bioengineering Hall (PFBH) Room 161 |
Office Hours: | Mondays and Wednesdays 12:20 to 1:20 pm, PFBH 161 |
Teaching Assistant: | Cherilyn Go; ctgo@eng.ucsd.edu |
TA Office hours: | Tuesdays 3:30 to 4:30 pm in PFBH 391; Thursdays 3:30 to 4:30 pm in PFBH 291 |
Texts: |
1) Required Text: Principles of MRI by D.G. Nishimura (available from www.lulu.com) 2) Assorted Handouts |
Prerequisites: | Graduate standing or consent of intructor. |
Course Sites: | Main Site: cfmriweb.ucsd.edu Mirror Site: fmriserver.ucsd.edu |
Handouts:
- Information Sheet
- Preliminary Syllabus
- Homework 1
- Homework 2
- Homework 3 with MATLAB file
- Homework 4 (Prob. 1 corrected on 10/28/15)
- Homework 5 with Supplementary Notes
- Exam Sheet
- 2015 Midterm and solutions
- Homework 6
- Final Project
- Homework 7 with MATLAB file
Lecture Slides:
- Slides from 2014
- Introductory Lecture (09/28/15)
- X-Rays/CT Lecture 1 (09/30/15)
- X-Rays/CT Lecture 2 (10/05/15)
- X-Rays/CT Lecture 3 (10/07/15)
- CT/Fourier Lecture 1 (10/07/15)
- CT/Fourier Lecture 2 (10/12/15)
- CT/Fourier Lecture 3 (10/14/15)
- CT/Fourier Lecture 4 (10/19/15) with handwritten notes on Class Exercise (NOTE: refer to Lecture 5 notes for updated version of the solution and correction depiction of 45 degree projection )
- CT/Fourier Lecture 5 (10/21/15) with Backprojection movie and Filtered Backprojection movie
- CT/Fourier Lecture 6 (10/26/15)
- MRI Lecture 1 (10/28/15)
- MRI Lecture 2 (11/02/15) with k-space and spins movie ; spins and object movie
- MRI Lecture 3 (11/03/15) and spinwarp example movie
- MRI Lecture 4 (11/16/15)
- MRI Lecture 5 (11/18/15)
- MRI Lecture 6 (11/23/15)
- MRI Lecture 7 (11/25/15)
- MRI Lecture 8 (11/30/15)
- MRI Lecture 9 (12/2/15)
Related Links:
- Making an X-Ray Tube
- Matlab Tutorial
- Mathworks Matlab Tutorials
- Convolution Website
- Magritek MRI Videos
- Duke Virtual Imaging Lab
- On-line Medical Imaging Resources by P. Sprawls
- Principles of Computerized Tomographic Imaging by Kak and Slaney
- The Basics of MRI by Joseph Hornak (an animated on-line book).
- The Basics of NMR by Joseph Hornak (an animated on-line book).
- MRI Educational Links
- MRI Tutorials and Q&A
- MRI Artifacts
- SpinBench: Graphic MR Pulse Sequence Environment for MAC OS X
- Bloch Simulator for Windows/MAC/Linux
- MRI Software Tools
Related Classes on the Web:
- Bioengineering 278 Magnetic Resonance Imaging Lab
- SOM276A-C fMRI Courses in the UCSD School of Medicine
- Introduction to Biomedical Imaging EdX Course
- Fundamentals in Biomedical Imaging EPFL Courses Videos on Youtube
- COGSCI 276 NeuroImaging (formely taught by M. Sereno at UCSD)
- BME530 Medical Imaging Systems (taught by W. Block at Univ. Wisconsin Madison)
- BME516 Medical Imaging Systems (taught by D. Noll at Univ. Michigan )
- EE369C Medical Image Reconstruction (taught by J. Pauly at Stanford)
- EE591 MRI (taught by K. Nayak at USC)