!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> Bioengineering 280A: Principles of Biomedical Imaging - Fall Quarter 2015
Center for Functional MRI In the Department of Radiology

Bioengineering 280A: Principles of Biomedical Imaging
Fall Quarter 2015

Instructor: Thomas Liu
Center for FMRI (Map)
(858) 822-0542; ttliu@ucsd.edu

Lectures: Mondays and Wednesdays, 11:00 AM to 12:20 PM
Powell-Focht Bioengineering Hall (PFBH) Room 161
Office Hours: Mondays and Wednesdays 12:20 to 1:20 pm, PFBH 161
Teaching Assistant: Cherilyn Go; ctgo@eng.ucsd.edu
TA Office hours: Tuesdays 3:30 to 4:30 pm in PFBH 391; Thursdays 3:30 to 4:30 pm in PFBH 291
Texts: 1) Required Text: Principles of MRI by D.G. Nishimura (available from www.lulu.com)
2) Assorted Handouts
Prerequisites: Graduate standing or consent of intructor.
Course Sites: Main Site: cfmriweb.ucsd.edu
Mirror Site: fmriserver.ucsd.edu

Handouts:

  1. Information Sheet
  2. Preliminary Syllabus
  3. Homework 1
  4. Homework 2
  5. Homework 3 with MATLAB file
  6. Homework 4 (Prob. 1 corrected on 10/28/15)
  7. Homework 5 with Supplementary Notes
  8. Exam Sheet
  9. 2015 Midterm and solutions
  10. Homework 6
  11. Final Project
  12. Homework 7 with MATLAB file

Lecture Slides:

  1. Slides from 2014
  2. Introductory Lecture (09/28/15)
  3. X-Rays/CT Lecture 1 (09/30/15)
  4. X-Rays/CT Lecture 2 (10/05/15)
  5. X-Rays/CT Lecture 3 (10/07/15)
  6. CT/Fourier Lecture 1 (10/07/15)
  7. CT/Fourier Lecture 2 (10/12/15)
  8. CT/Fourier Lecture 3 (10/14/15)
  9. CT/Fourier Lecture 4 (10/19/15) with handwritten notes on Class Exercise (NOTE: refer to Lecture 5 notes for updated version of the solution and correction depiction of 45 degree projection )
  10. CT/Fourier Lecture 5 (10/21/15) with Backprojection movie and Filtered Backprojection movie
  11. CT/Fourier Lecture 6 (10/26/15)
  12. MRI Lecture 1 (10/28/15)
  13. MRI Lecture 2 (11/02/15) with k-space and spins movie ; spins and object movie
  14. MRI Lecture 3 (11/03/15) and spinwarp example movie
  15. MRI Lecture 4 (11/16/15)
  16. MRI Lecture 5 (11/18/15)
  17. MRI Lecture 6 (11/23/15)
  18. MRI Lecture 7 (11/25/15)
  19. MRI Lecture 8 (11/30/15)
  20. MRI Lecture 9 (12/2/15)

Related Links:

  1. Making an X-Ray Tube
  2. Matlab Tutorial
  3. Mathworks Matlab Tutorials
  4. Convolution Website
  5. Magritek MRI Videos
  6. Duke Virtual Imaging Lab
  7. On-line Medical Imaging Resources by P. Sprawls
  8. Principles of Computerized Tomographic Imaging by Kak and Slaney
  9. The Basics of MRI by Joseph Hornak (an animated on-line book).
  10. The Basics of NMR by Joseph Hornak (an animated on-line book).
  11. MRI Educational Links
  12. MRI Tutorials and Q&A
  13. MRI Artifacts
  14. SpinBench: Graphic MR Pulse Sequence Environment for MAC OS X
  15. Bloch Simulator for Windows/MAC/Linux
  16. MRI Software Tools

Related Classes on the Web:

  1. Bioengineering 278 Magnetic Resonance Imaging Lab
  2. SOM276A-C fMRI Courses in the UCSD School of Medicine
  3. Introduction to Biomedical Imaging EdX Course
  4. Fundamentals in Biomedical Imaging EPFL Courses Videos on Youtube
  5. COGSCI 276 NeuroImaging (formely taught by M. Sereno at UCSD)
  6. BME530 Medical Imaging Systems (taught by W. Block at Univ. Wisconsin Madison)
  7. BME516 Medical Imaging Systems (taught by D. Noll at Univ. Michigan )
  8. EE369C Medical Image Reconstruction (taught by J. Pauly at Stanford)
  9. EE591 MRI (taught by K. Nayak at USC)